ROLE OF JAVA CLASSES TO SOLVE DNA SEQUENCING AND MOTIF FINDING PROBLEMS IN BIO INFORMATICS

K.Senthil Kumaran; A.Vijaya Kumar; P.Jayaseelan; G.Mohendran

Article Information

Published In Volume 1, Issue 3 (2015)
Publication Date July 23, 2026
Manuscript ID IJCRCST-JUNE15-03
Article Type Research Paper
Pages 78 - 81
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Abstract

In java the classes Pattern and Matcher are useful for solving DNA sequencing and Motif Finding Problems. Pattern is a compiled representation of a regular expression. Matcher is an engine that performs match operations on a character sequence like DNA sequence by interpreting a Pattern. The Bioinformatics problems like DNA sequencing, DNA Mapping, Predicting Genes, Comparing Genes and Genome Rearrangements need enormous support from programming language constructs for searching billions of DNA chemical nucleotide bases (A,T,G,C). In this regard, System defined Java classes from java.util.regex java package will play an important role. Their capabilities will be analyzed in this research paper by doing dry lab experiments.

Keywords

Java Pattern Matcher DNA Sequencing Bioinformatics

Authors

K.Senthil Kumaran

A.Vijaya Kumar

P.Jayaseelan

G.Mohendran

How to Cite this Article

K.Senthil Kumaran, A.Vijaya Kumar, P.Jayaseelan, G.Mohendran (2015). "ROLE OF JAVA CLASSES TO SOLVE DNA SEQUENCING AND MOTIF FINDING PROBLEMS IN BIO INFORMATICS". International Journal of Contemporary Research in Computer Science and Technology, 1(3), pp. 78-81.